Scaffold Ga0049080_10003653

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10003653
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5355
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F019834	Metagenome	227	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000365310	F002406	GAG	MENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPAIVEELKSSSLIESDYFEDAE*
Ga0049080_1000365313	F105155	N/A	MMMQNLVKISAAKKLAAEIKYLEWDLVTFNFYHKTYKGYNFYKRNISLNYWQYTVTNDITHCTFKMYEKEANNA*
Ga0049080_100036536	F002398	AGG	MLPLLHVFLLTSVDPIKKFVSLKTYISENAKVHCQVYFIDESIADYPRVNLIEKSRVDFFAYLDTIGIEHTKVGSYYFFRKKPNNE*
Ga0049080_100036539	F019834	GAGG	MKELKFTITGTIFVPDNAEYENDFENQIYSFKIGDEAYSLIAGLGTDEKEIIVTDENFKSHNILPVQYEDAYFED*