Scaffold Ga0049080_10000295

Overview

Basic Information

• Taxon OID: 3300005582
• Scaffold ID: Ga0049080_10000295
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16229
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043765	Metagenome	155	Y
F079586	Metagenome	115	Y
F104453	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049080_1000029519	F043765	GAGG	VNYYYELNERTNKAKLEQWHLWCMPNCSPAEGGRMCFKTHDDFVANSRRVWLENANGVYLVKPRWGIYRGQADDREFTMIKLRARTIKWWEDD*
Ga0049080_1000029520	F104453	GGTGG	MTKDSYYSDTAARLDTLIGGETANFARIQQCKQEWDQLAAAVPVGQGFLTFEDYIREYYGIKLIMNHKLGGIDLDYVVIDEKKYTVFLLKFGQ*
Ga0049080_100002953	F079586	AGGAG	MSVRIESRSGQIDTERCVDHAGGRYDLVIAAAQRLREMKRRARETNGFVTAIDVLLEAQAGQLNMMDYLAKVK*