Scaffold Ga0049081_10072028

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10072028
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1300
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F081079	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100720282	F081079	AGGA	VDIEEFLRQLVGQTNTQPNVTNVGTNNLNLNAYTRPTLGGNVNAYQETPVGLLSGTIGKEGTNPIYKDVALTNKNLRGGILSQADNVAPYGEYRNGNVMAQIMGGNYPNASANYTTPLAGGQFTGGANYSNQGLGVNAEYAKQLNDLLFKARLSATPEERQILFGLGGQF*
Ga0049081_100720283	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVVLHDDTICGQYEPPQSGDPHIITISTARHTHLYPVLMTLAHEIIHMCVYLDSPKTDKYTSHKGLFLKLQKRVANHLGFDPKEL*
Ga0049081_100720284	F004547	N/A	VAITLLLLWVFLYDYAESKELVKEMSMATEAGEIVLTSEECAFKKQGLQGYDYAAYATDKGYPNHEGCWKSDSYEGKQAVYIYFPEINQTAVFDAKLFKPKATI*