Scaffold Ga0049081_10066288

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10066288
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074452	Metagenome / Metatranscriptome	119	N
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100662883	F074452	GGAG	MIPDNKSFGRHGGGRLGTDPFVRAEISETQRAQDYCEMSYVDEDNRIRYRLSCVLVEEEILDLLYCHGHITADQQAATINQARRTDDK*
Ga0049081_100662884	F080943	AGGAG	MISDETKTRLRELEGQRITLEDELERLAYTNNFARIAELEGELFDVKDSIKKITSGHWFEDISRAELQKEEATLQ*
Ga0049081_100662885	F083781	GGAGG	MININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDQDHAELLRADLEDFANANWGDGTKTSPYSTSVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK*