Scaffold Ga0049081_10062516

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10062516
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1401
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010672	Metagenome	300	Y
F023041	Metagenome	211	Y
F061549	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100625161	F010672	GGAGG	MPDMQTALKTALTRTLQEWDDDGEISPQTTINTTVNNSVPTPSQEIPMKKTFNITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNQMVHETNNAYYADIPEYRPIKSLKALKKLDAPIAPPKRKYEKKAVTGIGALLREKLENTPMPSQDALDSAAYAMGGHTPKRMISLVRVKSPEDILKDMTVYQAHDLYRH
Ga0049081_100625162	F023041	AGGAG	MNNTPYDTGKVKIGLTYVPPPPASTPESDWIQCILLGDKPGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0049081_100625164	F061549	N/A	IEADSSADAENKAFDEFDITKARIGEGEVYDTELIKKAKYVVRNHNGTLLGTFSHKDDAEKDAKEYRDQTGNAAYVNEETDDES*