Scaffold Ga0049081_10016737

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10016737
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2774
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014954	Metagenome	258	Y
F033353	Metagenome	177	Y
F088903	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1001673710	F033353	GGAGG	MRTEFHNEEFMITSEVTQTPDGRWRVMLRDDDSGQMVGPARLYDNQADALKYAEGLCA*
Ga0049081_100167373	F088903	AGGA	MKATVTNAKLLGAQRSGWGSFKHRLMAQLGIPQNQFDKWDVPTDWQQAFCRANGRQLEKKL*
Ga0049081_100167379	F014954	GGAG	MKTITLNRARYTVRDDRHSFLSDILKLTGKHKPVKSKGGDRRLYPTDGNVSTAAYVQEYYALNSTHRNFKAWGAPYGLNNTLVGFYEGLSDRLTVPMGEDSMEVCHED*