Scaffold Ga0049081_10013333

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10013333
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3104
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043359	Metagenome / Metatranscriptome	156	Y
F054798	Metagenome / Metatranscriptome	139	N
F059898	Metagenome / Metatranscriptome	133	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100133332	F088817	AGGAG	MNGYELLAEFETLINDLILVPNSWLPEDFRDNRTDSVSLADLERKCDAQEIGETDHQIEKREKDKRIAAYAAMIENGQEITYLLK*
Ga0049081_100133336	F054798	GGAGG	MIYLNINEIERLAEIVSELVKLGMSVTAELKYDRWQIEVYK*
Ga0049081_100133337	F043359	GAGG	MEWNNSHKNPPEVGQRVYYFGPNIGIGIGYYSYHPDRKMETYYYNENNEKVVDKEIEICQHVFTNQAKPWTCDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD*
Ga0049081_100133338	F059898	AGG	MTNDREKAMIYILSFFKNRMAAVNKHNVDKTKELIGTHEISLPELVNKYVELVFENS*