Scaffold Ga0049081_10012246

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10012246
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3236
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031492	Metagenome	182	Y
F032578	Metagenome	179	N
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100122462	F031492	GGA	MSQYNKGDKVILDDESGVIESVLVGAEGTLYDVRYGHTFMIATDVPEEDIQPWQADEQ*
Ga0049081_100122463	F048305	AGG	MGMSDYDMTIKNHQFRIAELMYEAAQEQLAARKAHIQIAEFGIEIARLNSHIQTLETTLSAMSGELHALRMETQ*
Ga0049081_100122464	F049615	AGGAG	MTPDTVNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMAELDLCRATLTQAHSDISRLRVYLAQGAEL*
Ga0049081_100122467	F032578	GAG	MSDRVEECWYCKHSPNELAHHCITFVVNDPIEGRAYDVRNEDILALNYIKTQIQSLDHERRNEYATLLIDAQSAKRNINLSAKKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKQEYTKAGEALGHLNAAQAELFAQICYGITVDQVTIQYIPEQNTFRVQEVRQ*