Basic Information | |
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Taxon OID | 3300005581 Open in IMG/M |
Scaffold ID | Ga0049081_10009234 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3742 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010028 | Metagenome / Metatranscriptome | 309 | Y |
F040004 | Metagenome / Metatranscriptome | 162 | N |
F052563 | Metagenome / Metatranscriptome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049081_100092341 | F010028 | N/A | TVPDKATFVKSFGRRHDIPMLVLHQTSRSSGADGMKLTMSSGAFGGEQQATSVIGVRRKKYSIMAEMNEIINKLDKTHSERAMERLDSLRYEAKIHEYTVTVSLLKNKRPAGQLVDDVDFELDLATGRLTPLLNGDLPKQYLRSFHDRQF* |
Ga0049081_100092344 | F040004 | GGA | MKESRWDIPKPNFKKDLEFGKQGEDQVKSFLQGIVNGSFEVKSDRYRNGKMVVETAQNPRKHGWKPSGIMITEAEWWVYVYTMNQAMVVVSTERLKRYIEMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDPAYDDVQE* |
Ga0049081_100092347 | F052563 | N/A | MSNRGPEDWIYDIIPAKQVEEIESKAKSLQHNLDNGLNVVLSATNDSAIRLCKAYYDSTQGNMQAWLHIMGFLDALIGTIEQHLEEEGIDPYAK* |
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