Scaffold Ga0049081_10009234

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10009234
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3742
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010028	Metagenome / Metatranscriptome	309	Y
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100092341	F010028	N/A	TVPDKATFVKSFGRRHDIPMLVLHQTSRSSGADGMKLTMSSGAFGGEQQATSVIGVRRKKYSIMAEMNEIINKLDKTHSERAMERLDSLRYEAKIHEYTVTVSLLKNKRPAGQLVDDVDFELDLATGRLTPLLNGDLPKQYLRSFHDRQF*
Ga0049081_100092344	F040004	GGA	MKESRWDIPKPNFKKDLEFGKQGEDQVKSFLQGIVNGSFEVKSDRYRNGKMVVETAQNPRKHGWKPSGIMITEAEWWVYVYTMNQAMVVVSTERLKRYIEMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDPAYDDVQE*
Ga0049081_100092347	F052563	N/A	MSNRGPEDWIYDIIPAKQVEEIESKAKSLQHNLDNGLNVVLSATNDSAIRLCKAYYDSTQGNMQAWLHIMGFLDALIGTIEQHLEEEGIDPYAK*