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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10007603 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4095 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F006220 | Metagenome | 378 | Y |
| F009750 | Metagenome | 313 | Y |
| F010398 | Metagenome | 304 | Y |
| F024557 | Metagenome | 205 | Y |
| F043399 | Metagenome | 156 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000760310 | F006220 | GAGG | MKKQKYVESLNLASGTEMMRASQMRPVTFKDKSKYSRKQKHKNRQDKNSGDSLFMG* |
| Ga0049081_100076032 | F024557 | GGA | MDSHVWIYFSKTGMGYEMAGTDIISGIDAFLNLPETYIIEYSFSDLKNDMYFFIYEWDNSQKKRRTVFDRYKKETVLMGMAKHIDKLPLDIKEKILSMYYNDDEELELEKNANS* |
| Ga0049081_100076033 | F001561 | GGAG | MQTREQKLKLLKKTIETLWHGVEGTKTGDYPRIVNLYKEVLKIEPKDRDAWENMVWLMWSLAINNKDTAWLFEAEKFAKRYLSIMPNGYRSYEYVGMFYRSMIKDEKLAVRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLTRFPNDPYAKSKIEYLTKK* |
| Ga0049081_100076035 | F009750 | N/A | MKEIITAIYQNGQFKENKILKPHLTDRLGIRLVFPEGAECILWTNGKKYYARCEAFGTLFTLNIPQNLGDDIWERFKTHYEGNYSYENI* |
| Ga0049081_100076038 | F010398 | AGGAG | MEISIEGSLEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVIDNEADIDYNEIHEESTVYADTLTIDDSDKMTTVYYEENRKTGSVEIL* |
| Ga0049081_100076039 | F043399 | N/A | MFLDDFPIVIWTIVKKNSNYILLDSSGIEVFRRKENRKQEIYKYCEENGIDYQEEF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |