Scaffold Ga0049081_10007251

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10007251
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4193
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F007415	Metagenome / Metatranscriptome	351	Y
F034929	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000725110	F007415	N/A	VRKYSYYPAFDGKAAQPGTVKLVALCAARWKTKNLGIYVPRLMRNSHTEGKKIGDPGMEKWLSVHSTGAACDVGYPDRKTGVAMWDWLLAHTKELGIEEIHDYAFDVNVKDKVQGYGRGFRCSRGENAAGVKIFTATDNAGSFGGKWLHIELSPAMAKDADKFQKAWDSIPYP*
Ga0049081_100072516	F005027	AGGA	METSTGELIARLMNLSNQLAIELRFKESSLVLEVVGLLHSLPTIAEQNRQAWHPSLNTSGASKGITYISTVKQTHE*
Ga0049081_100072518	F034929	N/A	MIPTWGYVALRSKDKKTMVQVFTDLSTGLIVYTQVCQRAQSWHSWGPPTEVERVD*
Ga0049081_100072519	F004670	AGGA	MIYTDLPLFRASDPDTSRQASPLKVGTHRAVLLEQYFYATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTIGLIEDLGIRRALTSGSQGIVCAITQAGIDTVRGWA*