Scaffold Ga0049081_10005185

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10005185
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4918
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F019829	Metagenome	227	Y
F027510	Metagenome	194	N
F061848	Metagenome	131	N
F063688	Metagenome	129	N
F072334	Metagenome	121	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000518510	F027510	N/A	MTVNNLPKFLILLVGLLCLTALMIADKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFGNKSKK*
Ga0049081_1000518511	F007579	AGGTGG	MPTPTKQQIDTQIGNATRELAPGTTWKYNEPGDGYYCLQWLDDPALQPTEAATMLKATELAANPPTVSQ*
Ga0049081_100051853	F063688	GGA	MTRYNSNYGSHEQLQDLRKLNMGLHHELDAIKRLLDETTKELHQAQDELTLAIEALVRARDVKP*
Ga0049081_100051855	F072334	N/A	MTEKVETPDTQLQKVTLLIAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEITKVMQILSVQDCEVVVSNGL*
Ga0049081_100051856	F082693	AGG	MAQIDERVTIRLNSQDRAEINYLYRELETQTKQLQARDTFTHSYTPKASFTGLVAEYAFAKWFGYDYVIKPYDPTNDDVLGYQIKATERYDGCLIKQPHNPSGIYILGIVLNDYSEVSFRGWKDSSEIQRACYWRADVPKPGYFVPQAALWPLSDLPETSELQTHRTTGLW*
Ga0049081_100051857	F019829	N/A	MTDYPIPDPGLTERTRQMYTEKYAETFKSFVDEVLLNKPPASKPVDHSILLDELAILREKYLSGTPSDEHKFAGAVITAAMAVIIGI*
Ga0049081_100051858	F061848	AGG	MNFLIAKIFTAVTISLSGLAFAYDAYNAPSAMPVTPPVTVSLAPVLAVTTTTVKPLTDCQYALRLARQAGWPLTEMGTVARILWRESKCQAKAFNKFDTQGGSYGYYQINGYWCRPNKYWPIGWLQAKGLVTTCTDLLDPVVNTNSALAIWHNSGYGPWALPNP*