Basic Information | |
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Taxon OID | 3300005581 Open in IMG/M |
Scaffold ID | Ga0049081_10003464 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5945 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001805 | Metagenome / Metatranscriptome | 631 | Y |
F014609 | Metagenome | 261 | Y |
F018353 | Metagenome | 235 | N |
F023328 | Metagenome | 210 | N |
F028786 | Metagenome / Metatranscriptome | 190 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049081_100034642 | F023328 | AGG | MTVYTPTYRITIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPLVELLDTIIIEVTNSTGAYVKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGSVAYPEELDGARIQRILEETLYVAWEDISNTFTWNDFTTETWANYGVQGIDTIDPGRYEVLARPAEIEQAYNLTDTTQQSALGYLYDTPEFEIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVAAQNDTSINNYGLLEEVRSTILAQTADATEQATNFVNYRGTPKVSLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI* |
Ga0049081_100034644 | F001805 | AGGA | MTMAKSKEEQIFIGDGDQVIELTGADKEAFILQREADNAERALLEAEYKAKQEARESAIKKLAEIAGLTKDELNAIL* |
Ga0049081_100034645 | F028786 | N/A | MQSFNYKQVSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNVKSKIK* |
Ga0049081_100034647 | F018353 | AGG | MSKPKAKKTVIELPDVMASELVRIINTAHEEGKLITGFVTCLELFDGKKKTIKIVANQDMPQHSVFGIINYAAEKYQFTVAPDEDEDDDFYDPNWFDGQ* |
Ga0049081_100034648 | F014609 | N/A | MINELIGIIGLLVTILVLTIRATVEITKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR* |
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