Basic Information | |
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Taxon OID | 3300005581 Open in IMG/M |
Scaffold ID | Ga0049081_10003219 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6146 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (90.91%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005558 | Metagenome | 396 | Y |
F023834 | Metagenome | 208 | Y |
F026539 | Metagenome / Metatranscriptome | 197 | Y |
F027417 | Metagenome | 194 | Y |
F031792 | Metagenome | 181 | Y |
F093528 | Metagenome | 106 | Y |
F095162 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049081_1000321912 | F005558 | AGGAG | MDQESMSWSELAELTHATQVERFNFCTCEDNEGNENPYNDCPKEDK* |
Ga0049081_1000321913 | F093528 | AGGAGG | MSEETSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE* |
Ga0049081_1000321915 | F031792 | GGAG | MGYEPELNDPIFYEEEKEREIKCFICGDPLDEDDIVWADEEGQIGREGNDTAWCVSCLPSEKGESNE* |
Ga0049081_1000321916 | F023834 | AGAAGG | MNKEYWQAKAELCRDLALIQIEDEETEKEAGMNLMRMTYALSMVDVYSEGKGENE* |
Ga0049081_1000321918 | F095162 | GGAGG | MENEKRLASAAKQAVYYRNYRRARDRALVKLAQTYPDAYKELLEKEKVSDEQEGKAWIDLNGTTISPRIVARAKARGITFTQTDTDQGNDGGEG* |
Ga0049081_1000321922 | F026539 | N/A | VSELHKSIYDIAPSVASAIARRFRGYVERDDVLQECLAWSLTRGKHFDEMLNEPNPVQRVINEKRIAWQMKRAAERYARKEKAAKSGYRTGDEAFYDTAMIAQVLPHVIASIVDDTVLEQAQNLINDGSPKKPSVPAEGGNLLASLIDVKRSYLKLEVEDQAILRMRYHEGQTLQQVAGILECAVSTADRRCTSALRKVQNGLGGDNPWQ* |
Ga0049081_100032199 | F027417 | GGAGG | MSYDYRVTFVTDYLTITTNVCIEGDEHFQNLSDEAYEQATINGINNIEDEIGKIDETIINDITVTLLLDDEEIELGGFGEFPPVHVSVIEGEGE* |
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