Scaffold Ga0049081_10001954

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10001954
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7749
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026879	Metagenome	196	Y
F027772	Metagenome / Metatranscriptome	193	Y
F029651	Metagenome	187	Y
F030428	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000195415	F027772	N/A	MVDKLKELETQIGLVNDIMRHTDVNDPRMESLRELLAVMYQELTKLRPAMDKLDKPLLSDDSL*
Ga0049081_100019544	F029651	AGTAG	MDKDYYFTEIEWARTVGYGSVPPERQVSKINEQHWNGEQQLNKSTGQVEVWYNGGWTAR*
Ga0049081_100019545	F026879	AGGAG	MLRQLAAILLLSSNLALAQDLPKELYMPNESGGYIVLTTDACPNAGAVKLGYTYRAYATESDSEKPATHEGCWDSPSIADAPKLQGVRIIPLVNLWFDGDMVTFPQTLFGPEKKRWDITPTIEVKPNV*
Ga0049081_100019548	F030428	AGG	MEIRNYTELTRICGGNITPQALKLVLADIEFQTTAVKQEFWQYMFEMGEAFGDIQSFIVQDSNLNKDKNYA*