Scaffold Ga0049081_10001817

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10001817
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8021
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000181710	F076942	GAG	MNSKVIVLADETTGAVVNVSQNNTDYGYIRVQQVRTMIDDNGFLRRKPVSALIPGTLAELKDSSFFAGQQLDGKIVVEESLEPFNEKTPERDLKIAGETGVVCTLGGLPIYRRTKMSFDGSASDTLIKHDNVEQLRAAYAAQSTKSKAITPNEDFSIGG*
Ga0049081_1000181711	F010462	AGG	MIYIYLHIYMHVMLYQLPNGKVVDLSIEEYLDLTDEDVQYLMSIDYGQHITNPFKGSAVDQNTKEKYYDFEFLSQEYEDPNDIISDDIPFDDIIDLSDNLDM*
Ga0049081_1000181712	F048248	AGAAG	MRISVNYDNTDVAKALGKILKDPNAEEFVKLLTPMICTSQHASEYFFKLMLGNKLPEIIPNGTLCRTSVANLGYGSNKEAIKEKFADADGNVIVTIKEFRGFHEYSQYHIEYTDVLDNGTTKTDITYVQYKDLEVIEEF*
Ga0049081_100018174	F074450	N/A	MEDYTKDDVISAFLKITQKSRKRVLVDQRSYLIGVLAFRFMMSEHAIADAVGYKRTNINYNKRLVLQLHNDKSYMENVYVYAQLFPFDFDVIEVTTKVERSRRIELDLDNKFYNKLKAAGSILGHADIRITIKSFLEKSLKLWEE*
Ga0049081_100018179	F000716	N/A	MEKLKIQVRNYQLDGSKTYMQYEQDKYSVYQNYLYKRALYGLESLTEEELTTMCSKKKQRIVNVFKRAQTVLNTFKQRLTIKYSNDFFELFFPNAKLTQDVLECTEVDEKYKNTLTFKDLKVSKDDIITIFIAEGILPKNFLSLKESPITLPSLKNESKTQRM*