 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10001260 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9606 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011143 | Metagenome / Metatranscriptome | 294 | Y |
| F020143 | Metagenome | 225 | N |
| F026865 | Metagenome / Metatranscriptome | 196 | N |
| F045093 | Metagenome | 153 | N |
| F081333 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000126012 | F011143 | AGG | MHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTELLFGDDYINQYLDVDLVYDSKNG* |
| Ga0049081_1000126013 | F026865 | N/A | VSVATGISPKDLLEVDPAIYSAIKAILQEKYYNNKKATVRRK* |
| Ga0049081_1000126014 | F020143 | AGGCGG | MIKPRYAELPGRTRSLAAVPSIYVENLTELLEKMKKVDPDLQKEFRRELSKAVKPVAKLAQSFVPHSPFPGWRDVEPNYPPQWGWANDQVHRGRTIGQDKRSRWKWSQTEVIRGIRVSTAKSKVQRIKGVTFGVTALAVVNKSVPGIIYELAGFGSSRSRGRTRRVSRNPNASESFIGKLQGTANSGAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG* |
| Ga0049081_100012602 | F045093 | N/A | MQNAKQLKIVASGKPKKKLGRHTSAMVKSLQGRNDIDDVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDIFE* |
| Ga0049081_100012604 | F081333 | AGGAG | MKYIPSVLQVIGSLLIVAGVATISPLIAVILSGAFLVLFGIALENRGK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |