Scaffold Ga0049081_10001027

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10001027
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10550
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F025481	Metagenome	201	Y
F032653	Metagenome	179	N
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000102710	F019816	N/A	MRELIPFERQMLLAEVYHYAWYNEDAYADLLLFIEKYQNLLDKPVFLTPINNNDTETTNLEPLAFGQNIDTNPGSNEI*
Ga0049081_1000102715	F025481	N/A	MTHLTTYQMFQYQRYGNILIDGSRSTSNPYDPALLPKNYDYEDDDYTFTRWVENNAELELLKTEHYED*
Ga0049081_1000102721	F032653	N/A	MRIILLALLLTSCASVKKFEKRYDSTGTTKIDSVRLTFYDSVTKIIEKEQIFTKEVTIYDTIRVTKDSIIVVPKIVTKWVYQTKEKETDNSLVKKDTIAFNRTESTQISIVDKNKVSTANNFWKALIGLIIAIVLILAYWNRLWK*
Ga0049081_1000102723	F010833	N/A	MKNKDLLQLVANLNSVIGNSETKTQKKLVKIYERVKKHHEDYQAEVETLRLDAAQTDDKDCLLLDEKGNYKFSKEGIKKLTKDIEALNDKEFDFQIINVVNPANLEDFTFLKDWVTGVEFNKQEEEEL*
Ga0049081_100010276	F011074	AGCAG	MQLVGINNPGDVKLAILEDWIRTEYGNFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSTGIKKWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTESWLKNQARAVAVALFFDLQIANNKTSFK*
Ga0049081_100010279	F033030	N/A	MEQKKWSAGAWKKTTAKGEVINFTINDVRYSMWVNAYKTEDKQPDFKIYINDFKPKEDTEGLPF*