Scaffold Ga0049083_10002171

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10002171
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7441
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F048994	Metagenome	147	N
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000217111	F103250	AGGA	MQKIEINTKYGWASARIGRYSNGHLGIQLFQDGSPLAKISSNLIDTVLEPREFHFNSNDAGTMKEDVLKSGHFEDTGKTNFSGFCEYPVFKLKDHVEVVEG*
Ga0049083_1000217114	F006220	GAGG	MKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKNRQDKNSGDSSLGMIRSYL*
Ga0049083_1000217115	F048994	N/A	MIGTVKIEFGFMNLYVNGVCVVSTNTMAGIKHAMKRYNLQGYTMVAAG*
Ga0049083_1000217116	F004583	AGGAG	MRTTRNSDRLREILFSTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQMSLVCQTENVEPKRMGWFSGQIKSKEDRLTNIMD*