Scaffold Ga0049083

Basic Information
Taxon OID	3300005580 Open in IMG/M
Scaffold ID	Ga0049083_10000617 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005580 Open in IMG/M

Scaffold ID

Ga0049083_10000617 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12844
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12844

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004816	Metagenome / Metatranscriptome	422	Y
F023523	Metagenome / Metatranscriptome	209	N
F029658	Metagenome / Metatranscriptome	187	N
F051731	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000061710	F051731	N/A	MMNTFEHNRNILKSINNFNLLEKTRYEAPRDIKQTTFSNPLPKQRHHKIIDNNKMNNPYIGIAHIDYVKKDTPPYYGLHETGSKSISYEDFFKVK*
Ga0049083_100006174	F029658	N/A	MNFGRAIGLFNRVAPKITRGIGQVSHIARNVGQAIGNVRNIGSTLNSMSGGRIGDSQFGRKMQEITNKIESGADFVANNEDKAQGLINDVSRKFNA*
Ga0049083_100006176	F004816	N/A	MKFIKYKQVARITFYGFDDLYRDNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIQGLDNVKLSEHARFCIESINVPILYDNIDDRKSLGQTIVRMSNLSSINCFDTHGKGNTDPVIFTAQTHPYQQRLGTVTNNVIYGNTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDSITLTDDQEYFDLFHISFIVYDLDEEELLLTSTQNINFEKLGETLPRKINNIR*
Ga0049083_100006178	F023523	N/A	MISEENLSEWNNKPVKFSSVIYPQSKDNNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLSAKMEELKYDLEHAKEYKLYKVVYKKFKECKDIDELNDDEMKLLYKFNFVKFQDLEKPKYPEGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFISKEQFKDLYDYATDEAYNALVIDATKGRPIFKKNFESILKIN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049083_10000617

Overview

Ecosystem & Geography

Associated Families

Sequences