Scaffold Ga0068855_100532780

Overview

Basic Information

• Taxon OID: 3300005563
• Scaffold ID: Ga0068855_100532780
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009482	Metagenome / Metatranscriptome	317	Y
F018405	Metagenome / Metatranscriptome	235	Y
F066093	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_1005327801	F009482	GGA	MLKVEMAPLVIPLLLIATPTVADVTSELARCELEAERLFPAPHNKGAQNWPERASNLQKRAENIETCMRAAGYGVTAECSAPLKTYESCMKIADKLMRGPTGSQYRDADWNRICLDNEWDVRTQERLSADCYQSGGWWRRWL
Ga0068855_1005327802	F066093	N/A	MGCACTGRVRSLASATHVVLLTLISTLDAAETSICTVAANPSGFDHRQLTLEGIVAGLTKGTSRSGRKDMTFLLRSPVGCGGVIVYAQEPATLRNGDHLQVEGVFETQHRRDGSTFHNEMQATKITTLPR*
Ga0068855_1005327803	F018405	AGG	MNTSDIYRQAIKRTFAGLYGVAPDKVDVSWSDTGDNITVRCADKTFTHETLHDDDEPTLEFVGDGAVTVRLTTAELLRLEGID