NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068855_100309141

Scaffold Ga0068855_100309141


Overview

Basic Information
Taxon OID3300005563 Open in IMG/M
Scaffold IDGa0068855_100309141 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005312Metagenome / Metatranscriptome405Y
F009363Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0068855_1003091412F009363GGAGGLSARVCPHCKTEISPANVAAYSNDVVCPKCGSRLEVASGSRTLASLAGLIAGAIAWRLSIDASGDLNAVLPTLYAFLAFGVVSPLVLMFTGALNNAPEIPVAEPSHAASTGGHGGGHH*
Ga0068855_1003091414F005312GAGVIPHQRTIVWAHEGIHTFDMARYSALLGCRIVVTYRAGDIVLPATGNLAADSGKSIFLEEHYQQKGSVKTFRWEIPYPCILELSECPEGPKPSASVNSPRETATEASPLPGALRFKKNLA

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