Scaffold Ga0068855_100014374

Overview

Basic Information

• Taxon OID: 3300005563
• Scaffold ID: Ga0068855_100014374
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9531
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. W3-3-2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068855_1000143747	F035981	GAGG	MNNDDSSGADEILGADEILGADEILAGEEILAGDESAGDESSGDEVGLRLFRRRKKGAPKKLDPIVQNRLTQQGVIVKSAAYSKGRSQSLGFEFLAVQPGATVDVTANPQVLFKPKRLVYTGPANTFVIQDAKIGRSSQFVASGPQAADAYPPTSTVDNMELDTARPGVVITLRMQNVGGVAADFRATMFGLVAE*
Ga0068855_1000143748	F026424	GGAGG	MMNLSLAQVKKFGSEIQSLKNKHEKAIQKADDVIEQGVDATLASATAFGLGIWQTRADHQKLLGVPVDLAVGLAAHAAGFMGMGGKAGPYLHSVGNGALAAHFHTVGRGVGKEMREKAGLPPIAMSGEGPAEGGSNLSDDALLEMARRRG*