Scaffold Ga0058697_10001682

Overview

Basic Information

• Taxon OID: 3300005562
• Scaffold ID: Ga0058697_10001682
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Ma.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7769
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012810	Metagenome / Metatranscriptome	277	Y
F041055	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058697_1000168211	F041055	AGGAG	MDEARITRPSPPSTRAIVANEGFCRQVAALLLCDRGPIHDAFIGEPAEEVLEMVCWVLSHQDDEGFDAAKVLTAWAKKRGRGAWSGRPRSPEPNSDGELTWALANFWAEHPRELAQLLERVQARVNANGRS*
Ga0058697_100016827	F012810	GAG	VGSGLLLVTGFFVGVVLRSVLLGVLLFALGAIFFAIRGYLNTGDKAVTGALIFVSVVAIGIEAIVYFMGP*