Scaffold Ga0066699_11169506

Overview

Basic Information

• Taxon OID: 3300005561
• Scaffold ID: Ga0066699_11169506
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F021376	Metagenome / Metatranscriptome	219	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066699_111695061	F033892	N/A	AAGDIVRIYCFTTWDTPEQLEAFLERGYTFERMLGDVTGIRAQPVVLMEKVF*
Ga0066699_111695062	F000280	AGAAGG	MAGEQQGRFSRLRPARPLLGYRDTGEDVRHSRGSLVRAWVILAALVIFYLGWTLTVYFLEPGLR*
Ga0066699_111695063	F021376	N/A	VYLKHLSSLQFLTYVAFFSVVIAAMFKFVPGKPSPVRTTPYPEDELGAHDRKT