Scaffold Ga0070704_100311988

Overview

Basic Information

• Taxon OID: 3300005549
• Scaffold ID: Ga0070704_100311988
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F008441	Metagenome / Metatranscriptome	333	Y
F045282	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070704_1003119881	F008441	N/A	LLKAAGRARILAVVPAPRMPDESGGDRQAQLLEAYAEAGLLWAKVVGSSLALAGTLIERGEWEDVRALAGLLAGAGEENAATELRIRLGGAVWEAHREQLRAISNNMPPAAIELAINALRAILREVPEEFPDRNREVNCFLPPLASAVHAIMQKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGGPTT*
Ga0070704_1003119882	F001698	AGGAG	MAGVVNDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGIGRPPEVRGGMAGGTGQGTARRDRNSR*
Ga0070704_1003119883	F045282	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLEAKASRLRARLELGQAEYTACQDRAARADPDDPVDCSGYARAVQQDSERLEQIRLWQQRIDAEAGEFSG