Scaffold Ga0070665_100036921

Overview

Basic Information

• Taxon OID: 3300005548
• Scaffold ID: Ga0070665_100036921
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y
F089085	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070665_1000369212	F010880	AGAAGG	MSYALKKGTTSKILLVYAPDATDMRFGKTGLSSQTADSSAAYIREGEAQVRRIPLVEGKLGEHRAGSFVEIDSNLLPGVYQFGLPDEMLAAGADTVTLMLRFPAAVIEPTSIHLVAYDPQDSDRLGMSALGPEGRRAALRGAFPRLTEKELGDALWKSRGLKT*
Ga0070665_1000369213	F014022	N/A	MEVTGIENLAFTGSAQPYRRHIIGLPLQRSLFRQATQAATTIGLPGLTAESDFPAQLDENGDLFLDRSQIAALSKGLLAWFTSETVELMHARHSAACEALVMATENAGDAAASIDSKSARKLSEDLANKMALVLTYGILSKFVPDLLLRALADLGDVEKLPFPEKSAGAQLVQDTFGLYQACSDLGCTSIQLQREWPRVSPRIFELVSEFCNRQTGFGPLAWDAPGYEDPSYVLRLLHSAFDQVDPEQIRRRLSFVARPATNQSTIDVPIEIAALRRALGFWLDFLERETWYVRRAFFVGMVPLLQQMTAEYREKIPSFQPSDLLFLDFRELTAGIADPAAIHARRDLYMGNTDYLSVHGVDSNRLVSMLGNS*
Ga0070665_1000369217	F089085	N/A	MPAPESRARWWDLLPEYARFHQEFGTRTTTGEFEWLEVRPELVISALLKSLVQPGFEMVPRVLGFRDVPPLHIKWIKCRYHFRSDTFALIWQSIVRATWDEAFMIDLMRRIRASYDRLAEVLILFPGTNEELQAISGDRMVALITSWWPRWVEFFALCWFIQAQGDDILFPFIEETINHNLGYAGAPPPDQVWPGPADFIAPTTPVLSAAYMADVAKLREALLAAGLRTSGEAESAFEVGEHAAIAEMVREHLQKWQWMRDRDLLFEPWDTRSRVIETALKTEPHVVVPYDLNLRRNLLALSFHFDLAHRSGRALGLNHAARFLHDLNVERENHHVLWLKYSYPLRQLAVEIERRLIAVGSLDKGDVFFLQAPELIAAASNLPAPLPTDLVSMVRNRRKGYLIEARLIGSDAKPAVPEDDYY*