Scaffold Ga0070665_100000005

Overview

Basic Information

• Taxon OID: 3300005548
• Scaffold ID: Ga0070665_100000005
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 734905
• Total Scaffold Genes: 651
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 289 (44.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034040	Metagenome	175	Y
F036529	Metagenome / Metatranscriptome	169	Y
F053033	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070665_100000005226	F053033	N/A	MLAKNPALRLSPLLTFMNRRVLSLSLLALFAVFLTAPRASAAPQALAENTTVKLPSGHTIKVLSVSKVEFSKGVMAIMVRYQTSLSVDETKALSQEVDDVWKIAVKDVERAGYKEAIISSNEVPKGMFIYATHMLNFLYEKGSDGKWTRLNRADYMAAQ*
Ga0070665_1000000055	F036529	GGAG	MNMINLHDTFVFSFAPLFAQEVPAPDPVQLSSWLVDAAAVGAILLVFLRVIDHFKRRPSLEQELEKLLRQLRTELNQLRHEQAEHLAEVRTRVEGAHQRVDLLTHDLNNKLQRLPSEIVDLLHKTGVIAR*
Ga0070665_1000000056	F034040	N/A	MNTEPEIPYADPAALLQARALKILKPCLDYWLDEQTLYLTLNLSRPHIPRAQLEAALRELRDKAYIDFRVDPLSRLTEWRLTPSGRALAQPL*