NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070732_10047620

Scaffold Ga0070732_10047620


Overview

Basic Information
Taxon OID3300005542 Open in IMG/M
Scaffold IDGa0070732_10047620 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2473
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F013395Metagenome / Metatranscriptome271Y
F051385Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0070732_100476201F013395N/AIAARSKTESLLFVFLRVDHEHDIAILRPMIAPDIGVQLDSGPRQLAPGTVLTCEMFPREHDAIVESQVSKVSEMVLDCGGHKFVVKTLDFAPSRK*
Ga0070732_100476202F000512N/AMLREYKGVLVQLISILRETHDTPEGVARSLELAGGTNRFREPNYRAVWGWNRLAWIGGKFEERDPATASLLREVVDLRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTMEVEGGRSVPALGPYPARGEYEHCFTLEGPRGEFLQLTPTVAEHIARAIEWSRRHPRSAGKRALYDREQRQEHSYDAYAYDILDDAVPAFHRQPFVTVA*
Ga0070732_100476203F051385GAGGMFSKNWLRTASGVGLLIASVSVVAQSMLHNDFGNQLYFGTSLVAVFGYLFLTSRTKEEERDSPWWW*
Ga0070732_100476204F000739GGAGMMTRVEVWLKGVLAAAVSGAAGGVLTGLAAVGIDPQHFNLQTGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE*
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