Scaffold Ga0070732_10000056

Overview

Basic Information

• Taxon OID: 3300005542
• Scaffold ID: Ga0070732_10000056
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119698
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (72.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000391	Metagenome / Metatranscriptome	1196	Y
F008157	Metagenome / Metatranscriptome	338	Y
F009085	Metagenome / Metatranscriptome	323	Y
F035095	Metagenome	173	Y
F077420	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070732_10000056100	F077420	GGAGG	MKTLIGILALVFVLGLPALAQVQRMTSDDEAAFNGYYSRWLQDKQTNNRDDMISMEHHMQDLMSKYSIPSNTPYDAVASQNGASYNGYGDRDRDRDRGYANQWQNRLSPDDQNKFNKEYTKWQEANARNDRDDIDKHARNMEEIMSRYNIPQDTPFNEVATVGGYTSHMDVRQYQGRLSPDDQKKFDKAYEKWQRDRAGHDRDDIAKDEGKMQEIMAKYNIPRDVPYDVLASGNRGY*
Ga0070732_10000056114	F008157	N/A	MNIHVKGTTGVIIAAVIMAAVLIAFPAYRVFFAISVGIGVVVAGILYLRNKYRPITDKDIENKRPLGLS*
Ga0070732_1000005628	F000391	AGGA	MDPETQQSESPYRVKIETESGQSATVPIAVLTPKQLEVFLQSEFKRLAQEAGIQGVRIHVERAIAADYEQREVTACLSSAKAQAA*
Ga0070732_1000005635	F035095	AGG	MNNQNNASRGAYGAAAAPAREKTGNAKPQHSVFGESPLAAKHVSYGLPCSNCKTYYGADLSACPICGNPQRVSVVEPVAVVAPAEQLPDPEKLEQERERFLSEFNSQVVASPLPPDLPAPAQHCNHIENHVSAPEAATICQGCYDRLQERVDVLEAAMHMDIKEAAQIVYDAVWSDPTDPSKTYQNAAQALLTELRRRSGVPQVFGPLQPPVN*
Ga0070732_1000005654	F009085	GGAG	MNHMVQLLVVQLSLVFGVAGLLWPEKLVAVFDVLMFPWPATHRLVRANAWGALFLAVLLFVVVLAKLHL*