Scaffold Ga0070733_10030732

Overview

Basic Information

• Taxon OID: 3300005541
• Scaffold ID: Ga0070733_10030732
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3351
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023429	Metagenome / Metatranscriptome	210	Y
F037348	Metagenome / Metatranscriptome	168	Y
F095146	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_100307322	F023429	AGG	VRLGARSTQRLTSQLRLALEPECLENPTATAREIPRDGADSVRNTQAVCGFRCWASKFTPLFHTINAMVAIFLAKVRRAISGRMPLVSKAA*
Ga0070733_100307323	F037348	GGA	MGHESRIELWSPNLTTVLLCWFRNYRLRCQEVMKTAGRENPIHGVALPRNRARGAEEQNRSRSIKWAEKQEKFQPKGVCFFLTSPFIELLKSS*
Ga0070733_100307325	F095146	AGGAG	MGSARGNIRICAAVVLTLCGVFVSKVRAQQQSNEYVNRQAPMVHMAGLLRLVETIPIPTEGYMDHLTYDLKKQHLFLSAENNKKIVVADMKAGKVIHETQVGGNPRKPFFD