Scaffold Ga0070733_10004894

Overview

Basic Information

• Taxon OID: 3300005541
• Scaffold ID: Ga0070733_10004894
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8882
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001010	Metagenome / Metatranscriptome	807	Y
F017896	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_100048941	F017896	N/A	SLLDSAYQRSTASRDDVLMEAAKRYRVDTEKLQKVVAHELGTKRDRKTKAKPKPNGRKTAA*
Ga0070733_1000489411	F001010	GGA	MSVLVELHNTGNATIRREVQVIVEHVLSDRPGEWRVSIVGSRAKEDWEMKVEGPNGFERSYTLVGAAGEHQPAAIGNLLLRLLPSKTS*