Scaffold Ga0068853_100324183

Overview

Basic Information

• Taxon OID: 3300005539
• Scaffold ID: Ga0068853_100324183
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1428
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006485	Metagenome / Metatranscriptome	372	Y
F012897	Metagenome / Metatranscriptome	276	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068853_1003241832	F006485	AGGGGG	MDVRTVKDLCVRLDELSTILELMEGDPINVALYREASDALNQALSEIERLRSEADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0068853_1003241833	F012897	AGGAG	MTASTKAAFLVALPLGAAWYLWHGHSIVAAALMAAAFAFIIGTNIRSDVRRKQAEANLHEQAKSDGRNAAELMEVRSQPQAPTAPELQAKSVAHLEDL