Scaffold Ga0068853_100038053

Overview

Basic Information

• Taxon OID: 3300005539
• Scaffold ID: Ga0068853_100038053
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4096
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015476	Metagenome / Metatranscriptome	254	Y
F090727	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068853_1000380531	F015476	GAG	MEVLRNLFGNLTAGIIRLLVTVGILAAVYFFVVKPTLDTTKTISHEVNGNIQQSLKEAHIGKTIEDVNRQVQREIKRSLRHAPSHSAADKLLRCIQRAHQNVHKIERCNERYSP*
Ga0068853_1000380536	F090727	N/A	VFQFVAYPLALANLEAAMLDACAAEEEWPAQIAAAINAGVDFAIAHPEVVETLAADAPRGADTLPRYETVIGRFAGFLQVKAPADRRLPGSTDEALVAGVVGLVGDHLRIGRQDRLQELRPELVLLTLLPYLGFAEAQRWANWSAR*