Scaffold Ga0070730_10161703

Overview

Basic Information

• Taxon OID: 3300005537
• Scaffold ID: Ga0070730_10161703
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1513
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001619	Metagenome / Metatranscriptome	662	Y
F028828	Metagenome	190	Y
F054194	Metagenome / Metatranscriptome	140	Y
F058741	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_101617031	F028828	N/A	GPGGHPSARFVTGMPLSEQIARQISATDPTSRAIHAQRLESEARKQSRAKPLPRRR*
Ga0070730_101617033	F054194	GAGG	MARVNRQKISTTIAPENAAFLKSLLKRGKAVTLAEAVDRAISVARRAEARERLEAATEAYFASLSPEALEEENRLGEALAYETDHVNFDE*
Ga0070730_101617034	F001619	GAGG	VRDFIERLLRGRYVGMLEGEVARLRAENRALTNSLLGTAGFPPVDYPEPAKPQPLPRLRKRSWHQIQAWREADSVRDANVNFDGREGARTNGPVSHS*
Ga0070730_101617035	F058741	GAG	MDLYPTAETWTGTPGAIAPADGNAASAVAPADENGTTRFGTSIVGAQHAAPLLGTTDLGPNNERLEDLKPKLVHALRELVRQYREEGIVARRHEIRRIRQARLFWQGLQYAWWNPN