Scaffold Ga0070697

Basic Information
Taxon OID	3300005536 Open in IMG/M
Scaffold ID	Ga0070697_100000034 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070697_100000034 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	100952
Total Scaffold Genes	103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (55.34%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

100952

Total Scaffold Genes

103 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (55.34%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005396	Metagenome	402	Y
F015318	Metagenome	255	Y
F016601	Metagenome / Metatranscriptome	246	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_10000003476	F016601	AGGAG	MKPLNAELAARAWEFAQGLDLEEYRRLQQEVRTTWPATTKLRGLEFDRAFLSFIAERWLDKAA*
Ga0070697_10000003479	F005396	N/A	VASSRSLGVLFSLLAVGVMAGCGEDQSAPLPLQATASSSVGCKTGQGYQHTTLGYHLCFSNGWTSRDYTAEPGAGGAVSVVAFGPPSSVPAHVPASGTFSPPIEIRVVAGPKDQLEPSLAQGNQVTAATVAGTTADKIMVVDSGPANGSVILVFEHQANTFEIVEAPGGTYDAAFQLVLDSFSFPPG*
Ga0070697_1000000349	F015318	AGCAG	MGLANRVVEPGSPEPRPQPRRAGRRGPAVFTAVLGALTVPPILIAALSTPSASAFSGYVVIARDAYVYQSLWRAGWHGAWLFHPAFTSESVPGILLYPWYLWPAHLVGWAAGPWLYHIARLAAVAALLAAVVLLAAELFRPRLLRRWALVLCALGGGIGALLPRDLHLGPWTTRATEMSSPGSSVADLISMAPHLPWALALMCWTMVVALRLRRRAGWRLTASGLLAVVGLQLIYPQLALLAVVAIGGWSLTRRHRRALRFAAAAALVQLPYLGYLLWIWETAPAALRVIRPALDVSDPFGFLVLSHLVASGLIVIAIWRRRLRGDLLLPALWIAGMTVFMFAPGISGTLGRSFMASSVPFGLCAAPGLLALLRLVRPVRWRRRVLALTLAASSLFGLFSLAQPYWIATFRLDPYAEYESSAEAALLLRLAPRVSSRDLVLTTYLDGLFVPAQTDARAFEGHPDMTIDAPRKSAEALAFFSSWSVAERAKFLRVNNIDYVLTTSAIYRDRLEHDTALSLVDREGPAALFKVVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070697_100000034

Overview

Ecosystem & Geography

Associated Families

Sequences