Scaffold Ga0070684_100001921

Overview

Basic Information

• Taxon OID: 3300005535
• Scaffold ID: Ga0070684_100001921
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15248
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010704	Metagenome / Metatranscriptome	300	Y
F022970	Metagenome / Metatranscriptome	212	Y
F048976	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070684_10000192114	F010704	N/A	MRRFALALAVVVLLAPTSTSAAIRPQQGMAGVSLGMAKAQVRAKLGRPIGSGGGRLYFARVWVGFRLGRVVEVTTTHSNDRTRSGVGVDSTEAAVKRAYPSVVCAPAGGFRRCRLGSGKPGTRATDFLIGHGRVLQVTVQLLPG*
Ga0070684_10000192115	F022970	AGGGGG	MRIQVHPDAQEELLEFLRRADCEARADGDEAVIVEVPDALGEEQARLEVDLYVKAWQASRPDAEADLL*
Ga0070684_1000019215	F048976	GAG	VAAPSQRRVLGVLFLFLAVFFIGIAVTAVIAGGSAIVIALAAGVLGLWIGSFGLRALLVRRGQ*