Scaffold Ga0070735_10001955

Overview

Basic Information

• Taxon OID: 3300005534
• Scaffold ID: Ga0070735_10001955
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19077
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F004246	Metagenome / Metatranscriptome	447	Y
F015646	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000195511	F003165	AGGA	LGRDYKIKEIFMAKVIEFYVPKNLRKPLKWAPQLQFGKVIEFSSRTKKSA*
Ga0070735_1000195512	F004246	GAGG	MIDDWDEREDAVAAGSICPVPDCGALVVSYRPLERTGRDNSRSWCEFTCLHCGIDFSVPDDELIFQSVPKEWLLARVQAV*
Ga0070735_1000195514	F015646	GGA	MKTVYFAVVLSLTYLLDLGGSAYAARNNAHSVEISDAVQIGGTKLKPGNYKVEWQGTGPAVQVSFQQNGKTVVTVPGMLKTNDDQVIRDAIVTEATGTGASTLKEIDFRHLKQALVFDHNLGSM*