Scaffold Ga0070735_10001652

Overview

Basic Information

• Taxon OID: 3300005534
• Scaffold ID: Ga0070735_10001652
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21090
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007663	Metagenome / Metatranscriptome	347	Y
F010184	Metagenome / Metatranscriptome	307	Y
F010267	Metagenome / Metatranscriptome	306	Y
F016453	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000165210	F007663	N/A	MASNPNYVKKQLTVDTVSWTAIVAPIDCISVAIKNSALVDLRIRTDSADATTQDTISAGSVEVISTPRHPGGVQDGGSGTRFYAGDTIAFLQAASGTGPAQLTFVR*
Ga0070735_1000165213	F016453	N/A	MAKKKNTKKLQKNAFLGKLDHLGGKKLMQHGAEESSKSRESRKHSVGGKKG*
Ga0070735_100016522	F010184	GGAG	VAWLARNARSRYVRMMEEEVLRLRAENRALVNSLLGTAGFPPVALDEEVRRGPVAMSPVRRRTWTQIAREREVAAGKSVIRES*
Ga0070735_100016525	F010267	GGAGG	MTTSPSQSLGLWIELAGAGVFITGAILSLHHYAIGICFVAGAAAFYVGKKIRVS*