Scaffold Ga0070735_10000292

Overview

Basic Information

• Taxon OID: 3300005534
• Scaffold ID: Ga0070735_10000292
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59325
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (77.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002746	Metagenome / Metatranscriptome	533	Y
F050333	Metagenome	145	Y
F059139	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000029236	F002746	GGAG	VRIKDLGSRPAPKSIREMFSRVVRGRGPSIPVQRRQIPYWQERGWTRQGNIYTGSYQSPYGAFWGQIEQHRGGQIDFLLYNPSEQIQRHSHWVCFQHRGNDWYLVHMAKAPRDVSSGIIIVERLITEAYEF*
Ga0070735_1000029237	F050333	AGGAG	MKKLSVVVAGTGQIRDVEIQPGTSAGDILHQLNLSDYLLSKGPNEPFFAAAESVYDKVKDGEKIFASTKAEVGVLEPCA*
Ga0070735_1000029239	F059139	AGAAG	VEVVLEQADKLKAEIAELEEEIKAKRRQLQKFEEARKLFEAV*