NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070735_10000015

Scaffold Ga0070735_10000015


Overview

Basic Information
Taxon OID3300005534 Open in IMG/M
Scaffold IDGa0070735_10000015 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)239081
Total Scaffold Genes211 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (72.99%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F001102Metagenome / Metatranscriptome777Y
F002898Metagenome / Metatranscriptome522Y
F006810Metagenome / Metatranscriptome364Y
F044641Metagenome / Metatranscriptome154Y
F058377Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0070735_1000001510F000822GGAGMNRSILLCAVLLALASATFGQNAKTFRGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTSNTCAVYCIEHLGGYLVLSSGKNVYRLDRADMVHGFEGRRVVINGVLDTKLNQIHVIKIDLEEEKP*
Ga0070735_10000015115F058377GAGGMDFDRTQVTDYGNLLQEAAARTGFSASDMQELLECELNIDHLLDYITAVVSDRMN*
Ga0070735_10000015116F044641GAGMSRWKISASTLFILSCLVFIMLLIVVLPDVDLPDTAFHRGTAPLVVHARATTAPLVVAVAALFQLPSSNLILSLLRDSDRGDHLSPNFRPILLRSLRR*
Ga0070735_10000015174F006810GAGGMKRTLFCLFLLSTSTLLFAQNREHQEGTIIRMRMTDCLGPQHVFMAAMSGSGKMETGALCPEYVLVADKVVYVISGRASDQLISLAETTRFRLQKNEMLIRIDDASKETHFHIKAMVLRPEWDRAQMLQDAEASAMISQHLDAATVREQQ*
Ga0070735_1000001519F001102AGGAMQSGSKKQVDVVRLKADIAAASVELLSAHCAADRVRLQYSPQDVASFAERRALQRAISSSEAIYRYFREIAAHLE*
Ga0070735_1000001535F002898AGGAGMRDAEGKNSKFRVIIDFLQWLIGKRPAQPGDPYAYVMAPVRPGPKGRSGAAVTEIEEDSFRIFPPRR*
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