Scaffold Ga0070734_10005010

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10005010
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12049
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F042033	Metagenome / Metatranscriptome	159	Y
F070583	Metagenome / Metatranscriptome	123	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_100050103	F042033	AGGA	MNDQNRVLIRRGARSLSAEEIERVGGGISTTTLCTVPSTTCPNQDGDASIGECGHGC*
Ga0070734_100050104	F081702	AGGAG	MNDQTRVLIRQGSRELSPEEVDQVGGGFNTLSITFGPNGRDGDGLLGES*
Ga0070734_100050105	F070583	AGGAG	MNDESRVLIRRGARELDREETKQVSGGVRTLTACTWDPDFGGDGDSSIGEC*
Ga0070734_100050106	F011259	AGGAG	MSKQEDNRVLIRFGARELTMDEIDQVSAAMQKNTNVCTAAMPFSTTTGSGDGDGCSDSDKDSNFI*
Ga0070734_100050107	F037883	AGGAG	MSNQNEPDRVLNRMGARLLTEGEVESVSAGGPPCQLTFTHLPKGGSDEDTFCP*