Scaffold Ga0070734_10000008

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000008
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 741285
• Total Scaffold Genes: 718
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 426 (59.33%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F000138	Metagenome / Metatranscriptome	1954	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F000687	Metagenome / Metatranscriptome	937	Y
F000801	Metagenome / Metatranscriptome	886	Y
F000901	Metagenome / Metatranscriptome	844	Y
F001701	Metagenome / Metatranscriptome	649	Y
F002108	Metagenome / Metatranscriptome	592	Y
F003215	Metagenome / Metatranscriptome	500	Y
F005566	Metagenome / Metatranscriptome	396	Y
F011500	Metagenome / Metatranscriptome	290	Y
F016029	Metagenome / Metatranscriptome	250	Y
F017614	Metagenome / Metatranscriptome	239	Y
F044744	Metagenome / Metatranscriptome	154	Y
F062117	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000008189	F044744	GAGG	MKHRIKLAGTALVLLLALVSFTHFMRWMNLPSDLWFWSGVIASLLLLVVVPSLVASIWRTQRH*
Ga0070734_10000008219	F062117	GGTGG	VGNQVHYINLSVGDSFYHVDTYYTAQHNWVQGEIDIAFQMDGNYQQQPYSVWPDEVSLNAN*
Ga0070734_10000008229	F001701	GAGG	MNSSNYLYAAYAATWLIHGFYISVLIRRYFRLRGRISGQTKR*
Ga0070734_1000000827	F005566	GGAGG	LTRSLGQGDLIEVAFQMQSGPVHGMAEILSPAGKTTDGVLQPFRFIALEDDDHRRLTSSADSAVDRSWLNMKSKAFS*
Ga0070734_10000008324	F016029	N/A	MTTLASARDKKQKAQPGPYVFTSKTSAQTLKTLIVQANRTLGYTLDSDKPLQFRLSMPAQMPLVSAIFVASSACPGMTTKKVWSYTLTEADGMTKVTVEPVWEYPDDYCQVQTQPLIWSQHDEIAAFQALLDKAH*
Ga0070734_10000008383	F017614	GAG	MYWQPVVRCKNPDCPTPSAARIRLPYPKPPKTDAKAPKWPKEGWQARLICRDCDHWYVYEAGDVQWAPYTSPLADQSNLDFMCAELTCAEAGCKSKTRWYVLDNSQMSESELFEFVLRADPVVVCENGHPFQISGIKTQKASKAEKI*
Ga0070734_10000008439	F000078	GGAG	MRCLRCNRELGPGQKSVALYMFAQTVGVKPRQKSSAHRISFCPQCSVSLAMGPPPEGALNLAAWDMIRDLVGSDPALNQAAWENLSGVLGLLPATGSEGHLAAANSGYFEF*
Ga0070734_10000008475	F000687	GGGGG	MHMEENAIRVNPGNGHVEQVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDSVLNDELLELVDRKSSGRQPGFTKACRMVLMDANRALSARDVCDRIQEKAPPVLARHKDPMASVTTVLNRLVAYGEAKAVSLDNGRRAWQWVADAEAGAIH*
Ga0070734_10000008527	F000414	AGGAG	MSAPSRRPEIRRRRTRAHKIASLRKRLAAAQNDADRTRITAKLHKLAITSPGQPLVK*
Ga0070734_10000008563	F011500	AGGAG	MEVHAAKSARRCTRLRVEIPVTVTSLDRRHPFASECMAIVVSPQGCGLRASQALPIETPILLNNLPGGGSASARVASCLPLGRDGQGFLIGASLYNSGNIWGIANPPEDWNCGVAAAAADSGKPAGASKQSWPYNVFSGHTETRPRRK*
Ga0070734_10000008564	F002108	N/A	MAQTSETLPQAVSSPVQAPQRPFRVKLRGSILTVVRLPNRREVRGKLHQLSVTGGLMHIEKPLDEKLKIELVFQLGKTTVHEKAEMLFPMWATQGWLQPFRFIELPEANKNELETSLQSFVKGQQEAVS*
Ga0070734_10000008624	F003215	GAG	MAEGLPWRAEITRQVPKIKICIRQSVICGTIHAMRGTIRLLKMIQWIMLGSIFLYAAVGEVAGARASRGNASLTYMFTTMGVAIVGAVFVVRRTLVFRSAASLVTHPDDSLLLQHWRSGYIVTYALCESLALFGLVLRFLGCTFQQCLPFYVGGFVLLFFFGPRQPVGSES*
Ga0070734_10000008641	F000138	AGGAG	MHMQAMTSWRIQFSTLVSYVPIAATIVTTFFSIVLARATLRYVEATDKGLALAREEFEREWTPDLHIKLERVSASEARVIVTNLAKTSVLLQLLQLRKISHAMPFERCRLNDPLVGGMTWSQEIGRRILACTDREFEGPIAASMTFYAAGRMFRTDWFRSQIKVSEGRIVSLEPSNMPSRRVRVIERKGPERRRELVQDVATAGQEEKPRAEKFFEAGA*
Ga0070734_10000008665	F000801	GAG	MAHNEWTVKDLTEALKRFPSDAKVYYEMGPNGPGTIGKAQYVKAWGESDEMGVLLDR*
Ga0070734_10000008696	F000901	AGGAG	MALNGAAAYGVYSPNVALTDIVTNLNQAGFENEDICMMLSPGHPIASIVRDASLFNTEKESTAVTAGLIGWLSEFGAVLIPTVGFFIRSQVFFHALMVAREAPALCGNARTLVGLGFSPEEAERFEGDIEHLGVLVYVACNEQAKTLWAKEVLRHTGALEAATLRDQAMSVAASA*