Scaffold Ga0070734_10000007

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000007
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750658
• Total Scaffold Genes: 658
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 505 (76.75%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F000867	Metagenome / Metatranscriptome	854	Y
F001829	Metagenome / Metatranscriptome	629	Y
F005007	Metagenome / Metatranscriptome	415	Y
F005269	Metagenome / Metatranscriptome	406	Y
F010204	Metagenome / Metatranscriptome	307	Y
F012173	Metagenome / Metatranscriptome	283	Y
F018587	Metagenome / Metatranscriptome	234	Y
F018838	Metagenome / Metatranscriptome	233	Y
F020641	Metagenome / Metatranscriptome	222	Y
F043019	Metagenome / Metatranscriptome	157	Y
F045172	Metagenome	153	Y
F062065	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000007190	F062065	AGGAG	MAALANGSSEGNDWRNLYVTALFENDRDKIPLLIERAERAIVQRARELFGAEGDHIEEEEALDDALYALRALKTCLATHSRCAEAA*
Ga0070734_10000007225	F045172	AGGTGG	VNDQRAIRCVPVSRSLPYIRAAAGRRKASLISFGAVILCVLFVPRANAQSLTTAPQPSTEIQSLTKALSGEWSLNVKFEPGSQTPNGFVSSGEEIWRPGPGGFTLLEEEHLQMPEGDTFLLGAIWWNTATKSFHGMECQNRLPYTCDVKGAQNDITMNWDGTQFVIDEVETSKAGKKSMWHEVWSEITSNSFTQTGEYGDPGGPRKLLFTIHATRLTSLQIGKDRSQPKGDEPALEMQSLAKALKGNWSTTYEFAPGMSPSGGSETGEENWRTGPGAYVLIEEEHVRAPSEEMFLIAFHWWDKTTKSLRGMLCNNSGPAACDFNTYSNSSLNWNRKQLTIDMEFPRGGKNMTWHEVWSGITSTSFTQTGDMGEAGGPRKRAVTIRGTKTADEH*
Ga0070734_10000007372	F020641	AGGAG	MLTNISRTRTLLLAGVVIVLTFAVAGHAAQTITTPNEAVFNYNLAAGASSAAVTPASNTPVLVQGVQTTLGYRGVGHVSMLHVPSSFLEWTGLESPAAAAITSGFSGTAGTHIVYLDFSHLVDIRVNGPDTFVVHNANTIEQTGVVTLIW*
Ga0070734_10000007391	F000279	N/A	MNALMTQNNDPAMMEEVVLPEHLLPLGSVLGQGVSALDLCMVLAKIFRVQYTEVALMRLENGLLRFVFPEYLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPEGNETIDEATAPAPIQKLMSVPVMDRNSSVVGVIQISRKGLDPKFAQDFSREDLHDLELAAGLIATAPALLAN*
Ga0070734_10000007449	F043019	AGGAG	VLATRKFGTTCPVCKRFCMLGYVEIDEHASVAELRAKLLHDGWQGEPARCDDSRCAGETYCPWNEAIFPR*
Ga0070734_10000007470	F001829	GAGG	MRKQYLHLSAYPCDVCAGPVIAGSLGVRENEISKETDIQQVGAICLSCGHRQSAATEPSRARYLMPMEWAPLDGVEASRLTNDFVEALNRAELH*
Ga0070734_10000007479	F005007	GGAGG	VTIPVRGTAALLTAALIVVVTFVWLPAYRWFLLISIGIGVVVWGGLSLWHKLHPVSEEDVHNKRPLGLS*
Ga0070734_10000007486	F000867	AGCAG	MRKRLTLISAVVLLTSCSPRDVLSRRLAADLIQLSDTFRSQQSLRVQTGIVSSKDYLAPETLVLQHHGWISAATTACPAGLAPPPCWDILLTPSGVETVRTLISEQEATKPTFAIPVARREMVAITGVSKQGSVAQVEFTWKWIPLNEIGAALYSSDQRYRSTVGFRDYDDGWRIIESGPSSNLPLEEALRTAELAE*
Ga0070734_10000007518	F005269	GGA	LTINDSSASYAIIRYNIRTYRSAGVVAVIGGKHKAELELKNFEDAQDSSDRHEGWRYLIDKTDLKAGTDPAKATLHRQAELEKRESKALRETDPSNPSSLPRQR*
Ga0070734_10000007523	F012173	N/A	MNTILTPASPLSTPAPGGVKKKRVLLVDTSQPKRELRAEVMRKFGMDVDCAADVDEARLWWKADFYDLVLINMEKSREYRDKFCDDIRSATPPQRLAFLVGQPEYLAASPNVDEEVPLEKAANEILDDMRLALAADHGDPTQRWGILEASRRISEVRSKSLARTQAMRALPDLPRDSEGRPKRTPTAARLDDLLREELR*
Ga0070734_10000007534	F018838	AGGAG	MLPKQNKQQNQMCFQIHKNGGPVDGVSYATLGEASAALERAGQGGEVTAVDALDRIVRRYTADECRNARNSR*
Ga0070734_10000007537	F010204	AGGAGG	MPSFWEQKGVLGPIYRLAGEGLNDEGIALQLGLTEVKVRGCVTWIVRFLELKNRQELVLHASTAA*
Ga0070734_10000007538	F018587	GAGG	METVLHPLIVRARSLRAFIAASLRKALRMKPHDGDFASQRVCPFCARITPRYETSCLECGKALKAA*
Ga0070734_10000007543	F000309	AGG	MNPNGNLERILESAVVISWADLSRGSPTGLIHIEYGFATGGTLDYLKFWSSLTRGHWLLACQYWMSANTYHSAGVGFENGYNSESLAHVLEIAMQHQNSFVLPPNLGRQGLLQISMPTAAETAAAAALIKIAFDRLA*
Ga0070734_10000007545	F000042	AGGAG	MKNIKFVVKVGRGGDRAPAYVQRIDPTPVQMTTNRKLALIMGKLTAEDAVKSIQTSHCIPELVPVPVA*