Scaffold Ga0070739_10000270

Overview

Basic Information

• Taxon OID: 3300005532
• Scaffold ID: Ga0070739_10000270
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104365
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019694	Metagenome / Metatranscriptome	228	Y
F026535	Metagenome / Metatranscriptome	197	Y
F044625	Metagenome / Metatranscriptome	154	Y
F081055	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070739_1000027039	F026535	GGA	MATCAGCGNDIERRFRFCPWCGAVQRRKLVEFFWPHSNSPGRALRVTRYIGDDPQVRFSVWDDGVARAAVSLEEEEALRLAAFLEETSARRYDTAETL*
Ga0070739_100002706	F044625	AGG	MASIKDVEQVAEDLERLVGELRSELSSNADFERLIQISDEIAEHADNAAQTFSSVNETLMSRIRELKGGGESKRSQTRQKAASSS*
Ga0070739_1000027090	F019694	GAG	VAAATHRGSEKLGVFAFAIGLLVVIVGGAFAAGYLIGRILL*
Ga0070739_1000027095	F081055	N/A	MTVVRLPPWSEVLRGPWALRLRSGGSGAWLMRSEADSVPELECRFLDSRAARTASGALEELEQAFELQVPLGGFADLPDAVAGDATIALLVLDTDRLLSDEPEALAPLVAALRDASERRALRVIFQARELTPDAEAVLTEFGVAEIAA*