Basic Information | |
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Taxon OID | 3300005532 Open in IMG/M |
Scaffold ID | Ga0070739_10000024 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 346442 |
Total Scaffold Genes | 394 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 241 (61.17%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000776 | Metagenome / Metatranscriptome | 895 | Y |
F003367 | Metagenome / Metatranscriptome | 491 | Y |
F004031 | Metagenome / Metatranscriptome | 456 | Y |
F033979 | Metagenome / Metatranscriptome | 176 | Y |
F037441 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070739_10000024139 | F003367 | GAGG | MCLLLALSVPLTGCGSEAKTAEAAPAVAKPACPDRAAWQKLANRVGAPVYCPGWLPDPLSGRLGAQDNNINSVSPDRSYLESWVWQETGGGAAGGELHVNLRAYPGRTRIPTCRTGGSDSRNVPCFASPAGTISANGITSPVYTVNQDADSWHYALVWRRFGNLYTLSEHVAPPLTGQHVRRYLKQELASLVLVRPSKRS* |
Ga0070739_10000024297 | F037441 | N/A | MFGAHAIEHGSTRSGRWLRERRLRFTLWIAAVEGLLYVFHVLHWWAAVALAVIAIGFWWYVARNHRSDALRQLGWIFAASQLLVLCVPVALAVVKAIAIGVIALLAIAALIFLFRERPR* |
Ga0070739_10000024362 | F033979 | GGAGG | MKHRLIITAALAALACAILAATASAGRGDRGRHYAFRGEVVSATSTSVQITVEGGNHIALRKMLGQPQNETFTIGPSTEILGWQNGVPHVESYGDLKPGDWVQVNVRAPGDATLAQVEAMPAGIIGDHGTNPVRAKLPLFLFRGTVDGPQSGGHILLHIRGGNHRALRLLLGQSTDQTFTYDDNTIFLLWQGKVPSVISASQLKAGDLITVRIRAPRLSTLAQVESTPARHVGDHEPANAPDKA* |
Ga0070739_10000024380 | F000776 | N/A | MGEIDPLGTRKDGLDAFLAEKVAEGFAVETRTDTHAIIFRRPTALRRFMRGGDPGRFVVEVDEDGCATMRPAEPRRR* |
Ga0070739_1000002448 | F004031 | GGAG | MPDAIDGVLARAEAGDLGDPLPVLAYLAGRAVDLDPGELNGARRRALLLVAAGGDPHRELEVDDRAVKALAADLYTDERRVQLGRAIDALVLRVRDLPAVREAALFLAADVDLAWRLLALALLAEELGG* |
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