Scaffold Ga0070738_10002916

Overview

Basic Information

• Taxon OID: 3300005531
• Scaffold ID: Ga0070738_10002916
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24363
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F013999	Metagenome / Metatranscriptome	266	Y
F018762	Metagenome	233	Y
F055628	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070738_1000291612	F018762	AGGA	MRQLRRKLVPVAVVLTTALILPVAAHAIFGTMPVIDWTAVARIGEQIGVSRDTLNTLGLYVQQYNRINAGVQEGVTLARGRQLRGILNDTVSSEFPQFQQLQADFRNVLIDPSAIRHDIEDSYGVVTGDFPLERKKRFDAADATATLGLFDASRMELISEQEELDANDIESRAAVASPSGAAKLSAAANGALLRSQAYNQRLLARLMRLQSLAIARQNSIEKEQEQSRQDQVSAVSTMVGSMQLSYGIGDRAGR*
Ga0070738_1000291623	F007854	GGAG	MNTLIANQYGRVQGEVGGTGLTLAVTAETPRRESVQLQTRIDSVEQLLHLLAIMRAVERRIEQFQLREAKPSQPGETESAFDETIGSEGDLFSSNGSSKNKIYGRFAQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAFHAVAKRALFACNQVDLLLRDDLSLSVGLNVSGHGLQFEVQSPMWHSQFAITKANDLATLAVFTRRAVNQEKTVPVRFGDDATHVSLRKRNDGQVTAEFEHEGSAEKITLSTLQLLELEVLAHHALDRAFEPVSVPLRTHLSSAESATAAQIA*
Ga0070738_100029163	F055628	AGGAG	MRDKRLPFCLFVLAVLLLEIGCNSRANMSGVWKGSIEASEKSGKNKWQGPAELTLNQSGDAITGTLVFTHPQGGRVQVPISSGVVSKDTVTFSGQNQFPMGSLELTFHGTVSGTSLTGTADMTSRSMLVGPIANTATVNVTKQ*
Ga0070738_100029169	F013999	AGGAGG	MFRIVTKARRLAARAFAASTSLLLLAMPAFAQVAGDRVTGFLSNSLGYAQGLGIFGAGFLVMWAVANIARERPSGKQWAGAGGALLLSSLLQLLRTFAG*