Scaffold Ga0070741_10048557

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10048557
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5215
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F003167	Metagenome / Metatranscriptome	504	Y
F097868	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_100485572	F003167	GGTGG	MEPTITQNGALFALQHRPAKRNYRQHHHRQIASRNKTISTLRTSVGEFVFRQTPLGCHLELSVGNVRWPLGLYGTNEAALRAVKNGRTGFRTWDALGRKTAANQIGTPGRWNRGEQRP*
Ga0070741_100485574	F001033	GAG	MCGPFRIVRSTIAVFVFLIPGVTSVIHAERPHSTAWTSNTGTRKLFIDPSSASVALGKASLIVSPLTHRDGNYVGDYQLRVRPYFFKSEKGSLLLAASDEAVRKLQTGTAMNFTGKAVTHKDGRTHIVLGRATPSAGNRGDVTFSIITDDAKIVFNTSYHFGTQPGT*
Ga0070741_100485577	F097868	N/A	VHRIEFLQIVRDAEIAYAISPVVRRHRLSAEETEKFLLELRIPRAANVAQITHRLVVNGSQKASSELAAQS*