Scaffold Ga0070741_10005347

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10005347
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28631
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004655	Metagenome / Metatranscriptome	429	Y
F017744	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000534719	F004655	N/A	MRTIQVLSPVALGPADAKPLASRSHDLRGKVLGIRVDRAWRSFHVYADELRALARDRLGVADVVIFDPEARIGTPEAESGKVVDFARSIDAAVVGLGT*
Ga0070741_1000534720	F017744	GGCGG	VTEVFQNLARTAARAQGYPDLRVLVLPHPMESRPEAEVREIARTRFGELIGLVTTGG*