Scaffold Ga0070741_10000828

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000828
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102930
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (85.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F001932	Metagenome / Metatranscriptome	615	Y
F002319	Metagenome / Metatranscriptome	571	Y
F045172	Metagenome	153	Y
F105596	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000828102	F002319	GAGG	MSSQIVKLEVSASIPIECEFWPEDDGWKGLSGSPSVTVRGSSFEDAKKNMATELQAQIEEILRDHPTKSVRRIA*
Ga0070741_10000828107	F000065	GGA	MTHGANKLIPKLRKAPQPPLSHAGAIPDSDRAKRPPLSESSATGEQLIPGDRVEGLGNFGNPTGEFGTVKQANEEDAVVKWDDDGRVRVHQPSLKKV*
Ga0070741_10000828108	F001932	AGGA	MGTAGDFAELGEYGRESSMRRKIVVWFLLLLTGFLIGFILQYSRLQRVNEELSASTKQLGSCQSSQQLSQLRDTATMMYLEVVQKNYGKAGEYSREVFDQAQQIANSTEDPGLRNLLRETLATRDQITADLAKGDAAALSEIQMLLSRLQQTAKHS*
Ga0070741_10000828112	F045172	GGAG	MNGLSRTATISLCLLGVCGITIICANAQSLTSAPQPSTELQSLTKALSGEWSLNVKFEPDATMPNGLVNTGEETWRPGPGGFTLLEEEHLRMPQSEVFLLGILWWNTGTKNLQGMECQNRLPYTCDVKGAQNDITMNWDGKQFVIDEMETSKSGKKSVWHEVWSEITPNSFTQTGDYGDPGGPRKRLFTIHATKVANGQIKNDQSQSKDSAPAPEMQSLAKALKSNWSTTYEFAPGGISPTGGTGTGEENWRTGPGGYVLMEEEHVRAPSEEMFLIAFHWWDKTTSSLRGMLCNNSGPAACDFNTYSNSSLRWDGKQLIIDLEFPQNGKKMIWHEVWSGITATSFTQTGDAGEVGGPLKRALTIHGTKVGATEKSSGM*
Ga0070741_10000828114	F105596	N/A	MRPDDPFSEPWLIILVNPQGCAARFRRPLEVGSAVRLEGLPTRTGVTARVVNCISIGEYDKLWLLGLALHEPDNVWGIQSPPEDWTR*